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'Epigenetics' Ooh! La! La! Lamarck?

Pietro_Mercurios

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Some 200 years after the French naturalist, Jean-Baptiste Lamarck (1744 – 1829), came up with his theory of the Inheritance of acquired traits, or Lamarkism, which was, in due course, thoroughly rubbished in the West, by Darwinian Evolutionists, here's a BBC Horizon programme which suggests that geneticists have discovered a mechanism in DNA which will warm the hearts of Forteans everywhere.
BBC Online: Horizon

Thu 3 Nov, 9:00 pm - 9:50 pm 50mins

The Ghost In Your Genes

Horizon explores the ghost world in your genes - the hidden layer of inheritance that lies in every cell of our body. From IVF treatment, to post traumatic stress disorder, to the food our grandparents ate, the controversial science of epigenetics could change the way we think about inheritance forever.

At the heart of this new field is a simple but contentious idea - the idea that our genes have a 'memory'. That the lives of your grandparents - the air they breathed, the food they ate, even the things they saw - can directly affect you, decades later, despite never experiencing these things yourself. And that the things you do in your lifetime will in turn affect your grandchildren.

Epigenetics represents a major shift in thinking from the conventional view that DNA carries all our heritable information, and that nothing an individual does in their lifetime will be biologically passed to their children. It is a heresy to most scientists, calling into question the way we have viewed the DNA sequence - the very cornerstone on which modern biology sits.

But scientists have now found a whole new layer to our genes beyond the DNA. They have revealed how epigenetic 'switches' control the genes themselves, and that these switches can be turned on and off by environmental factors like nutrition and stress. It reports the startling first evidence that this can cause heritable effects in humans. [AD,S]

http://www.bbc.co.uk/horizon/
Has one of the 'Holy Grails' of hardcore fluffy woo woo Forteanism been discovered? However they try to hide it, it would be a real brass knuckled punch in the face for orthodox science. :D

Edit: Removed old reference to BBC Horizon programme in title. For clarification purposes.
 
TV reminder: this prog sounds pertinant to the stuff being discussed here:
Horizon

Thu 3 Nov, 21:00 - 21:50 50 mins

The Ghost In Your Genes

Horizon explores the ghost world in your genes - the hidden layer of inheritance that lies in every cell of our body. From IVF treatment, to post traumatic stress disorder, to the food our grandparents ate, the controversial science of epigenetics could change the way we think about inheritance forever.

At the heart of this new field is a simple but contentious idea - the idea that our genes have a 'memory'. That the lives of your grandparents - the air they breathed, the food they ate, even the things they saw - can directly affect you, decades later, despite never experiencing these things yourself. And that the things you do in your lifetime will in turn affect your grandchildren.

Epigenetics represents a major shift in thinking from the conventional view that DNA carries all our heritable information, and that nothing an individual does in their lifetime will be biologically passed to their children. It is a heresy to most scientists, calling into question the way we have viewed the DNA sequence - the very cornerstone on which modern biology sits.

But scientists have now found a whole new layer to our genes beyond the DNA. They have revealed how epigenetic 'switches' control the genes themselves, and that these switches can be turned on and off by environmental factors like nutrition and stress. It reports the startling first evidence that this can cause heritable effects in humans.
 
Not the same as memory - what we have here is perhaps a fundamental 'particle' for natural selection. If an adaptation is needed in the following generation(s) it makes sense to be able to alter codings for the future. This is not so mysterious. For example, if I were younger (cruel fate) and my mate and myself had moved from one environment to another (say plains to mountains) then our diets etc will have changed. All genes do is switch on and off proteins. So, my diet has changed and the air is thinner - my body chemistry adapts. Certain genes in my body will be switched on and off. It doesn't seem so hard to imagine that some of these altered codings will be passed onwards (preset if you will) to help the next generation. This also makes far more sense than the idea that so many random mutations in nature have been successful. So, no, I don't think that actual memories can be passed forward - though I look forward to hearing if it can be.....how fortean 8)
 
GadaffiDuck said:
So, no, I don't think that actual memories can be passed forward - though I look forward to hearing if it can be.....how fortean 8)
No, not memories as such, but perhaps the potential for certain memories, or memory types. If children and grandchildren can inherit things like stress indicators, who knows what other subtle effects remain to be discovered?

A very good Horizon, back to its high scientific standards, and without too much waffle and/or fuzzy, jerky camera effects.

As the program mentioned, some scientists consider this idea of epigenetics heresy - next thing you know [heresy alert!] someone will open the back door a crack to readmit Lamarck! ;)
 
Ah...I see what you mean by memory types now. Hmmm. Re: Lamarck - am I not right in thinking that there are some primitive worms that when exposed to learning, are killedand fed to other of the same type, pass on their learning? Okay, I imagine if true, these will be bloody simple creatures, and as long as the original sample isn't too 'mashed up' may just incorporate its parts...but ....
 
Wonder if this links in with the large percentage of DNA scientists claimed had no function, always seemed fairly likely to me that it had one, only they hadn't found it yet.
 
The idea that information can only flow from DNA to the proteins that make up an individual and not from the individual to the DNA is called the 'Central Dogma'; it means that nothing an individual can do can change its genes or influence the genes of its descendants.

This epigenetics idea doesn't involve changing the genes as such, just the expression of those genes. This is an inportant finding, and changes the emphasis of inheritable information; but it does appear to be an effect which persists over a limited number of generations for whatever reason.
 
eburacum said:
The idea that information can only flow from DNA to the proteins that make up an individual and not from the individual to the DNA is called the 'Central Dogma'; it means that nothing an individual can do can change its genes or influence the genes of its descendants.

This epigenetics idea doesn't involve changing the genes as such, just the expression of those genes. This is an inportant finding, and changes the emphasis of inheritable information; but it does appear to be an effect which persists over a limited number of generations for whatever reason.
Do I detect that some scientists may be doing squirmy double somersaults and triple back flips, to avoid giving Lamarck his due? Not all of them though and the stage is set for a minor controversy:
The-Scientist.com Epigenetics: Genome, Meet Your Environment
As the evidence accumulates for epigenetics, researchers reacquire a taste for Lamarckism
Volume 18 | Issue 13 | 14 | Jul. 5, 2004. (By Leslie A. Pray)

...

In a written commentary, evolutionary biologist Massimo Pigliucci said that Ruden's experiment was "one of the most convincing pieces of evidence that epigenetic variation is far from being a curious nuisance to evolutionary biologists."10 Pigluicci doesn't go so far as to say that the heritable changes caused by Hsp90 alterations are Lamarckian, but Ruden does. "Epigenetics has always been Lamarckian. I really don't think there's any controversy," he says.

Not that Mendelian genetics is wrong; far from it. The increased understanding of epigenetic change and the recent evidence indicating its role in inheritance and development doesn't give epigenetics greater importance than DNA. Genetics and epigenetics go "hand in hand," says Ohlsson. In the case of disease, says Reik, "there are clearly genetic factors involved, but there are also other factors involved. My suspicion is that it will be a combination of genetic and epigenetic factors, as well as environmental factors, that determine all these diseases."

...
 
Lest We Forget

Museum of Hoaxes.com The Case of the Midwife Toad

Can acquired characteristics be passed on to one's offspring? For instance, if someone acquires a limp during their lifetime, can that limp be passed on to their children? Or if someone acquires a scar, will that scar be hereditary? Modern scientific theory denies that this is possible, but an old theory called Lamarckianism held that this was the means by which evolutionary change occurred.

During the 1920s an Austrian scientist named Paul Kammerer had designed an experiment to prove that Lamarckian inheritance was possible. It involved a species called the Midwife Toad. Most toads mate in water, and as a result they have black, scaly bumps on their hindlimbs that help them hang onto each other while they mate. The Midwife Toad, by contrast, mates on land and lacks these bumps. Kammerer wanted to demonstrate that if you forced the Midwife Toad to mate in water, it would eventually acquire the same bumps that naturally water-mating toads possessed—and that these bumps would be inherited by its offspring because of Lamarckian inheritance.

So Kammerer filled a fishtank full of water, put some Midwife Toads in it, and then waited as generations of toads were born and died. Finally he announced success. A generation of Midwife Toads had been born that possessed black scaly marks on their hindlimbs. This proved that Lamarckian inheritance was possible! The scientific community was stunned. If true, Kammerer's results would have turned the entire edifice of evolutionary theory on its head. Scientists would have had to reevaluate everything they knew about the process of inheritance. But when Dr. G.K. Noble, Curator of Reptiles at the American Museum of Natural History, examined Kammerer's famous toads, he found something very interesting. They didn't possess black, scaly marks on their hindlimbs. What they did possess were subcutaneous inkspots where someone had injected black ink beneath the surface of their skin.

When the fraud was unveiled in 1926, Kammerer was humiliated. He insisted that he had not injected ink into the toads and suggested that one of his lab assistants might have done it, but in either case his reputation was ruined. A few days later he committed suicide. With him went the case for Lamarckian inheritance.


References:

* Koestler, Arthur. The Case of the Midwife Toad. Random House. 1971.
Needs to be updated. Will you E-mail the Museum of Hoaxes, or shall I?

Perhaps, it's time for another reapraisal of Kammerer's work?
 
Another bit of research that shows how the environment might affect genes:
The food you eat may change your genes for life

17 November 2005
NewScientist.com news service
Alison Motluk

IT SOUNDS like science fiction: simply swallowing a pill, or eating a specific food supplement, could permanently change your behaviour for the better, or reverse diseases such as schizophrenia, Huntington's or cancer.

Yet such treatments are looking increasingly plausible. In the latest development, normal rats have been made to behave differently just by injecting them with a specific amino acid. The change to their behaviour was permanent. The amino acid altered the way the rat's genes were expressed, raising the idea that drugs or dietary supplements might permanently halt the genetic effects that predispose people to mental or physical illness.

It is not yet clear whether such interventions could work in humans. But there is good reason to believe they could, as evidence mounts that a range of simple nutrients might have such effects.

Two years ago, researchers led by Randy Jirtle of Duke University Medical Center in Durham, North Carolina, showed that the activity of a mouse's genes can be influenced by food supplements eaten by its mother just prior to, or during, very early pregnancy (New Scientist, 9 August 2003, p 14). Then last year, Moshe Szyf, Michael Meaney and colleagues at McGill University in Montreal, Canada, showed that mothers could influence the way a rat's genes are expressed after it has been born. If a rat is not licked, groomed and nursed enough by its mother, chemical tags known as methyl groups are added to the DNA of a particular gene.

The affected gene codes for the glucocorticoid receptor gene, expressed in the hippocampus of the brain. The gene helps mediate the animal's response to stress, and in poorly raised rats, the methylation damped down the gene's activity. Such pups produced higher levels of stress hormones and were less confident exploring new environments. The effect lasted for life (Nature Neuroscience, vol 7, p 847).

Now the team has shown that a food supplement can have the same effect on well-reared rats at 90 days old - well into adulthood. The researchers injected L-methionine, a common amino acid and food supplement, into the brains of well-reared rats. The amino acid methylated the glucocorticoid gene, and the animals' behaviour changed. "They were almost exactly like the poorly raised group," says Szyf, who announced his findings at a small meeting on environmental epigenomics earlier this month in Durham, North Carolina.

“This opens up new ways of thinking about treating and preventing diseases caused by how our DNA is expressed”Though the experiment impaired well-adjusted animals, the opposite should be possible, and Szyf has already shown that a chemical called TSA that is designed to strip away methyl groups can turn a badly raised rat into a more normal one.

No one is envisaging injecting supplements into people's brains, but Szyf says his study shows how important subtle nutrients and supplements can be. "Food has a dramatic effect," he says. "But it can go both ways," he cautions. Methionine, for instance, the supplement he used to make healthy rats stressed, is widely available in capsule form online or in health-food stores - and the molecules are small enough to get into the brain via the bloodstream.

Rob Waterland from Baylor College of Medicine in Houston, Texas, who attended the meeting, says Szyf's ideas are creating a buzz, as they suggest that methylation can influence our DNA well into adulthood. A huge number of diseases are caused by changes to how our DNA is expressed, and this opens up new ways of thinking about how to prevent and treat them, he says.

But Waterland points out there is still much work to be done. Substances like methionine and TSA are, he says, a "sledgehammer approach", in that they are likely to demethylate lots of genes, and we don't even know which they will affect. But he speculates that techniques such as "RNA-directed DNA methylation", so far tested only in plants but theoretically possible in mammals, may allow us to target such methylation much more precisely.

From issue 2526 of New Scientist magazine, 17 November 2005, page 12
http://www.newscientist.com/channel/hea ... 825264.800

Epigenetics rocks! :D
 
Epigenetics rocks on... 8)

Lasting genetic legacy of environment
By Monise Durrani
Radio 4's The Switching Point

Environmental factors such as stress and diet could be affecting the genes of future generations leading to increased rates of obesity, heart disease and diabetes.
A study of people suffering post-traumatic stress disorder (PTSD) after the 9/11 attacks in New York made a striking discovery.

The patients included mothers who were pregnant on 9/11 and found altered levels of the stress hormone cortisol in the blood of their babies.

This effect was most pronounced for mothers who were in the third trimester of pregnancy suggesting events in the womb might be responsible.

The changes are thought to occur through the workings of a set of instructions that sit on top of our DNA; chemical marks which determine whether a gene is switched on and active, or remains silent.

This is epigenetics, an additional layer of information which scientists are now beginning to understand.

External influences

As an embryo develops, it experiences wave upon wave of epigenetic changes.

This was thought to be a fixed process, but researchers now think it could be subject to external influences, enabling a developing animal to adapt to its environment.

"The foetus and newborn get information, primarily from the mother, about the world that it will grow up into," said Professor Peter Gluckman, from the University of Auckland.

But what happens if that information is not quite right?

Professor Gluckman is one of a number of scientists who believe that increased rates of obesity, heart disease and diabetes have their roots early in development; that a developing foetus' experience of factors such as nutrition or stress could alter its susceptibility to disease as an adult.

Professor Jonathan Seckl from Edinburgh University has shown that exposure to abnormally high levels of stress hormones in the womb can alter an animal's biology.

"Imagine this is an animal being born into a harsh environment, or a child being born into a war zone he explains.

"Mum's sending a signal to junior - things are tough out here - so you had better set up your physiology, your metabolism, your behaviour, in order to expect trauma."

A beneficial adaptation in the short term, but over a lifespan, these physiological changes bring an increased risk of disease.

And there is increasing evidence it could affect more than one generation.

Altered levels of the stress hormone cortisol have been found in another group of PTSD patients - children of Holocaust survivors, born not months, but years after their parents were exposed to traumatic stress.

"They weren't a foetus, but they might have been an egg," said Professor Seckl.

So influences in the environment may affect not just a child in the womb, but the instruction manuals of the egg and sperm cells which become the next generation.

Food shortage impact

Other transgenerational effects have been observed.

In northern Sweden, researchers found that food shortages experienced by grandfathers as children had an effect on the longevity of their grandsons.

And in the Avon Longitudinal Study of Parents and Children in Bristol, fathers who took up smoking before puberty had sons who were more likely to be obese. :shock:

If correct, this research could have huge implications for public health.

"We really have to focus attention on the diet, lifestyle and wellbeing of young people, especially young women of reproductive age," says Professor Mark Hanson, from Southampton University.

"We are finding a fundamental part of human biology that we can't afford to ignore."

http://news.bbc.co.uk/1/hi/health/7151739.stm
 
That's quite an interesting Post, Rynner, but doesn't have more to do with evidence for Lamarckian Evolutionary theory, than about psychological archetypes?

http://en.wikipedia.org/wiki/Jean-Baptiste_Lamarck

In fact, how did these two different Topics become connected, in the first place? I'm going to have to have a proper look under the bonnet of this Thread, later.

:confused:
 
Pietro_Mercurios said:
That's quite an interesting Post, Rynner, but doesn't have more to do with evidence for Lamarckian Evolutionary theory, than about psychological archetypes?
True! I just searched for a thread which already discussed epigenetics.

Perhaps epigentics could be split off into a new thread, or summat...?
 
rynner said:
Epigenetics rocks on... 8)

Lasting genetic legacy of environment
By Monise Durrani
Radio 4's The Switching Point

Environmental factors such as stress and diet could be affecting the genes of future generations leading to increased rates of obesity, heart disease and diabetes.
A study of people suffering post-traumatic stress disorder (PTSD) after the 9/11 attacks in New York made a striking discovery.

...

If correct, this research could have huge implications for public health.

"We really have to focus attention on the diet, lifestyle and wellbeing of young people, especially young women of reproductive age," says Professor Mark Hanson, from Southampton University.

"We are finding a fundamental part of human biology that we can't afford to ignore."

http://news.bbc.co.uk/1/hi/health/7151739.stm
All sorted out, I've split the last few Posts off from the 'Archetypes' Thread and added them to this old Thread of mine.

And a jolly interesting subject it is too. :yeay:
 
GadaffiDuck said:
This also makes far more sense than the idea that so many random mutations in nature have been successful.

Well, it makes more sense if you lean towards an "evolution is a process driven towards a goal" point of view... but that involves believing evolution is aiming at something.

Personally, I find it far easier to accept that random stuff happens, and if it works, it gets passed on, and if it doesn't then it disappears.

If epigenetics is proven, it is still a far cry from Lamarkism. Dying my hair red all my life will not make my children red heads. Body building my whole life will not make my children muscular. Cutting off my legs will not result in legless children. That is Lamarkism.

But an environmental factor that alters my genes, with the result those genes are passed on to my children? Sounds like random mutation to me, which is standard Darwinism.
 
lawofnations said:
But an environmental factor that alters my genes, with the result those genes are passed on to my children? Sounds like random mutation to me, which is standard Darwinism.
No, not quite 'random'. Environmentally driven. (Certain mutations more likely than chance.)

That's not to say that all these genetic changes are beneficial, but epigenetics is an interesting half-way house between 'purely random' and the inheritance of acquired characteristics.
 
If an organsim can evolve a capacity for responding to environmental change via a mechanism that you might call 'Lamarckian'. And that response is beneficial to the survival of the organism (and the genes that determine it, however they are carried from generation to generation) then neither Mendel nor Darwin are relaly wrong. Only the 'central dogma' of DNA makes RNA makes protein, and the only DNA is inherited, is not correct.

A 'gene' is only a mechanism for transmiitting information across generations in that sense. Its' chemical provenance is largely irrelevant. It's just information system that happens to be one that can occur naturally in terrestrial type situations. To have the idea that in some fundamental way only DNA can inherit is to miss the point entirely.

IMHO, the more interesting question is why isn't 'Lamarckism' more common as it would seem to offer a way of responding to the environment more acutely than the hit and miss of random mutation. The answer probably lies in the fact that in terms of cellular mechanics it is harder to achieve therefore more 'costly'. The other reason is that we attribute an inordinate sense of loss to the fallen generations when of course nature doesn't care.

This is an interesting case but really shows what we can attibute as 'laws ' and what are really 'precedents' in science. The 'law' is that changes or mutations must convey selective advantage. They don't necessarily have to be random - that is merely the most common route. If a different feedback loop is biologically viable then that is fine...
 
How your behaviour can change your children’s DNA
New research into inheritance shows we can alter family traits for better or for worse.
Jonathan Leake reports

For Beatrix Zwart being young means having fun. She works hard, and out of hours she plays hard — including plenty of nights on the town with her friends.

“I lead a similar lifestyle to a lot of young professionals in Britain and I don’t intend to have any children until I’m well into my thirties,” said Zwart, a 25-year-old Belgian who lives in London.

“I’ve never really thought my lifestyle now could have any effect on my future children or grandchildren.”

Until recently that would also have been the opinion of most scientists. Genes, it was thought, were highly resilient. Even if people did wreck their own DNA through bad diet, smoking and getting fat, that damage was unlikely to be passed to future generations.

Now, however, those assumptions are being re-examined. At the heart of this revolution is a simple but controversial idea: that DNA can be modified or imprinted with the experiences of your parents and grandparents.

According to this new science, known as epigenetics, your ancestors’ diet, smoking habits, exposure to pollutants and levels of obesity could be affecting you today. In turn, your lifestyle could affect your children and grandchildren. For Zwart and millions of others choosing to delay parenthood this raises new moral questions. What effect, for example, will nights spent in wine bars have on their descendants? Will cigarettes smoked today compromise the health of grandchildren? If they become obese is that their right, or does it impose a burden of ill-health on generations yet unborn?

Some of the answers may be emerging. There is, for example, evidence that the recent surge in diseases such as diabetes, obesity and heart disease is partly linked to the lifestyles of past generations.

Last week academics at Baylor College of Medicine in Houston, Texas, published research showing that overweight mothers produce offspring who become even heavier, resulting in the spread of obesity across the generations. “There is a worldwide obesity epidemic,” said Robert Waterland, a professor of paediatrics who led the study. “Why is everyone getting heavier and heavier? One hypothesis is that maternal obesity before and during pregnancy causes epigenetic changes in the ways genes are expressed.”

Waterland’s research was done in mice for ethical reasons but population studies have suggested similar effects in humans.

Marcus Pembrey of the Institute of Child Health at University College London identified 166 fathers who admitted smoking before they were aged 11, and whose sons had a sharply elevated risk of obesity. The implication was that smoking had altered the way their genes worked without actually changing the genes.

In another study Pembrey and colleagues analysed records of an isolated Swedish community to find that men whose grandfathers had experienced childhood food shortages tended to live longer. They too appeared to have inherited a change in the way their DNA worked — this time a beneficial one.

Researchers had long suspected that DNA may not be the only means of inheritance. They knew that diseases such as cancer, heart disease and diabetes ran in families, but in complex patterns that seemed to defy traditional genetics. What they lacked were the instruments to peer into cells and see what was happening.

What’s more, other scientists saw such ideas as heretical, amounting to an attack on the evolutionary theories of Charles Darwin and the laws of genetic inheritance outlined by Gregor Mendel, two of the cornerstones of modern biology.

The next year will witness a rash of celebrations for the bicentennial of Darwin’s birth. It will also see publication of a number of academic papers on novel forms of inheritance.

Steve Jones, professor of genetics at University College London, said: “The evidence is increasingly that environmental factors like diet or stress can affect organisms in ways that are transmitted to offspring without any changes to DNA.”

Such apparent conflicts can be resolved but only by finding out what is happening at the level of DNA molecules — the basic building blocks of life — and scientists have never had that power until now.

“The technologies for epigenetics arose from the human genome project and have only become widely available within the last few years,” said Stephan Beck, professor of medical genomics at the Cancer Institute, University College London. “That is what makes it so exciting.”

A key finding is that although DNA molecules control almost everything that happens in a cell, each molecule contains far more information than any single cell needs.

A liver cell, for example, has no need for the genes that govern sperm production, while a brain cell that started generating, say, hair or nails could be positively dangerous.

This means that in every cell some genes are turned on but many more are “trussed up” and neutralised by a host of smaller molecules. The change, then, is not to the DNA itself but to the “switches” that turn the genes on or off.

The system that oversees this process, the epigenome, is meant to be flexible enough for such genes to be brought in and out of play as needed. Sometimes, however, it goes wrong
.

For example, a research group from Toronto’s Centre for Addiction and Mental Health looked for differences in post-mortem tissue taken from the brains of 35 men suffering from schizophrenia, a disease that runs in families but without any clear pattern. They found epigenetic changes affecting 40 or so key genes involved in brain function.

“The brain is particularly susceptible to epigenetic changes, especially during development,” said Dr Jonathan Mill, a lecturer in psychiatric epigenetics at the Institute of Psychiatry who was involved with the research. “That is why pre- natal exposure to alcohol or other toxins may have such a strong effect.”

For humans perhaps the most important finding of epigenetics is that we are not owners of our genes but their guardian. If we drink heavily, take drugs, get fat or wait too long to reproduce, then epigenetics might start tying up some of the wrong genes and loosening the bonds on others. Sometimes those changes will affect sperm and egg cells.

One of the clearest pieces of evidence for such changes emerged from the work of Avi Reichenberg, also of the Institute of Psychiatry. He found children born to fathers aged 40-plus were almost six times more likely to have autism than those born to fathers under 30 and that the effect appeared to be epigenetic.

In a society where people have children later in life, such effects have huge medical and social implications, suggesting that people putting off parenthood should be looking after their DNA.


Zwart is on the right track: recently she started a twice-a-week exercise regime, something for which any future children and grandchildren may well have cause to thank her.

http://www.timesonline.co.uk/tol/life_a ... 364054.ece
 
Study casts new light on research of controversial scientist Paul Kammerer
http://www.physorg.com/print171176041.html
September 3rd, 2009

A new study into the research of the renowned Lamarckian experimentalist Paul Kammerer may help to end the controversy which has engulfed his research for almost a century. The study, published in The Journal of Experimental Zoology, suggests that far from being a fraud Kammerer may have discovered the field of epigenetics, placing him decades ahead of his contemporaries.

Paul Kammerer, a leading proponent of the Lamarckian theory of evolution, achieved global prominence in the 1920's by arguing that acquired traits could be passed down through generations. In his most controversial experiment, Kammerer forced midwife toads, a species that lives and mates on land, to live in water. Their offspring preferred to live and mate in water and by the third generation he noted that they began to develop black nuptial pads on their forelimbs, a feature common to water dwelling species.

In 1926 Kammerer fell into disgrace when it was found that his only remaining fixed specimen had been injected with India ink to produce the appearance of the black nuptial pads. Kammerer's own role in the alleged fraud has never been proven, but six weeks after its discovery he committed suicide. Eventually, a naturally occurring specimen with nuptial pads was found, demonstrating that midwife toads do have the potential to develop them.

Now Dr. Alexander Vargas, from the University of Chile, has re-examined Kammerer's experiments finding remarkable resemblances to newly discovered aspects of epigenetics, a flourishing new field of science which studies influences in inheritance beyond the DNA sequence.

"Today Kammerer's scientific legacy is non-existent and he is often cited as an example of scientific fraud," said Vargas. "However, the specific similarities of Kammerer's experiments to epigenetic mechanisms are very unlikely to have been the result of his imagination. These new biological arguments provide a modern context suggesting that Kammerer could be the actual discoverer of epigenetic inheritance."

Vargas has studied Kammerer's evidence, as summarized in his 1920's research notes, and found that Kammerer reported hybrid crosses of treated and untreated toads in which 'parent-of-origin effects' can be observed, a recurrent phenomenon in epigenetics. Kammerer also reported that his toads developed larger bodies than untreated land toads and that their eggs were smaller and contained less egg-yolk than normal. These are traits that are known to be influenced by epigenetic mechanisms. Building on these observations Vargas proposes a preliminary model based on current knowledge of epigenetics to explain the midwife toad experiments, which illustrates how in a modern context an explanation can be offered for results which appeared utterly mysterious to Kammerer and his contemporaries.

Kammerer's consistency with current epigenetic mechanisms provides new and compelling biological arguments in favour of the authenticity of the midwife toad experiments.

"New experimentation on this species with the advantage of modern molecular-genetic tools could mean an end to the controversy," added Vargas. "If Kammerer's data is correct, the midwife toad holds the potential of becoming an excellent model system for studying epigenetics and especially its evolutionary implications."

More information: Vargas A, 'Did Paul Kammerer discover epigenetic inheritance? A Modern look at the controversial midwife toad experiments', J Exp Zool Mol Dev Evol, Wiley-Blackwell, August 2009; DOI:21319
 
No-one expects the Spanish Inquisition!

And I didn't expect the second part of the BBC's "Secret Life of Twins" to wander off into epigenetics - although, after the event, it's obvious I should have, given my previous interest in the subject.
The Secret Life of Twins - Episode 2

The second programme in this two-part series focuses on how the differences between identical twins can help science understand what makes us all who we are.

Through these personal stories we look at aspects of health and lifestyle that affect us all, obesity, ageing and the fight against killer diseases including cancer. We meet identical twins Mark and John who are helping scientists to explore the possible genetic basis of sexuality, they may be genetic clones but John is gay and Mark straight - they want to understand what makes them different.

Broadcast on:BBC One, 9:00pm Thursday 1st October 2009
Duration: 59 minutes
Available until: 9:59pm Thursday 8th October 2009

http://www.bbc.co.uk/iplayer/episode/b0 ... Episode_2/
Even that blurb doesn't mention epigenetics - watch the prog from about 42 minutes in for that section.
Scientists are even working on epigenetic therapy now...
 
Early life stress 'changes' genes
By Victoria Gill
Science reporter, BBC News

A study in mice has hinted at the impact that early life trauma and stress can have on genes, and how they can result in behavioural problems.

Scientists described the long-term effects of stress on baby mice in the journal Nature Neuroscience.

Stressed mice produced hormones that "changed" their genes, affecting their behaviour throughout their lives.

This work could provide clues to how stress and trauma in early life can lead to later problems.

The study was led by Christopher Murgatroyd, a scientist from the Max Planck Institute of Psychiatry in Munich, Germany.

He told BBC News that this study went into "molecular detail" - showing exactly how stressful experiences in early life could "programme" long-term behaviour.

To do this, the researchers had to cause stress to newborn mouse pups and monitor how their experiences affected them throughout their lives.

"We separated the pups from their mothers for three hours each day for ten days," Dr Murgatroyd explained.

"It was a very mild stress and the animals were not affected at a nutritional level, but they would [have felt] abandoned."

The team found that mice that had been "abandoned" during their early lives were then less able to cope with stressful situations throughout their lives.

The stressed mice also had poorer memories.

Dr Murgatroyd explained that these effects were caused by "epigenetic changes", where the early stressful experience actually changed the DNA of some of the animals' genes.

"This is a two-step mechanism," Dr Murgatroyd explained.

When the baby mice were stressed, they produced high levels of stress hormones.

These hormones "tweak" the DNA of a gene that codes for a specific stress hormone - vasopressin.

"This leaves a permanent mark at the vasopressin gene," said Dr Murgatroyd. "It is then programmed to produce high levels [of the hormone] later on in life."

The researchers were able to show that vasopressin was behind the behavioural and memory problems. When the adult mice were given a drug that blocked the effects of the hormone, their behaviour returned to normal.

This work was carried out in mice, but scientists are also investigating how childhood trauma in humans can lead to problems such as depression.

Professor Hans Reul, a neuroscientist from the University of Bristol, UK, said that this was "a very valuable addition to the body of work on the long-term effects of early-life stress".

"There is strong evidence that adversities such as abuse and neglect during infancy contribute to the development of psychiatric diseases such as depression," he told BBC News.

"This underscores the importance of the study of epigenetic mechanisms in stress-related disorders."

http://news.bbc.co.uk/1/hi/sci/tech/8346715.stm
 
rynner2 said:
"There is strong evidence that adversities such as abuse and neglect during infancy contribute to the development of psychiatric diseases such as depression," he told BBC News.

I don't know if this is anything new, I remember hearing years ago that babies who don't get enough love, even cuddles, grow up likely to be of the "I'm not OK, you're not OK" personality type. Don't know if any mice were traumatised to find that out, though.
 
gncxx said:
rynner2 said:
"There is strong evidence that adversities such as abuse and neglect during infancy contribute to the development of psychiatric diseases such as depression," he told BBC News.

I don't know if this is anything new, I remember hearing years ago that babies who don't get enough love, even cuddles, grow up likely to be of the "I'm not OK, you're not OK" personality type. Don't know if any mice were traumatised to find that out, though.
What is different is the fact that they are suggesting that the genes of the subjects are altered. Potentially, such changes could possibly be passed on, though the genes, to the next generation.
 
Pietro_Mercurios said:
What is different is the fact that they are suggesting that the genes of the subjects are altered. Potentially, such changes could possibly be passed on, though the genes, to the next generation.
Yes, quite right. I should perhaps have emboldened the last sentence too.

"This underscores the importance of the study of epigenetic mechanisms in stress-related disorders." )
 
Not sure if this is actually epigenetics, but it's closely related:

Key cancer gene 'link to poverty'

There is a genetic explanation for why women from poor backgrounds are less likely to beat breast cancer, Dundee University researchers have said.

Poor lifestyles may trigger a key gene mutation linked to worse prognosis, the British Journal of Cancer reports.

The researchers tested samples from 246 women and found that a woman's postcode could be connected to the "health" of the p53 gene in her tumour cells.

Cancer charities said adopting a healthy lifestyle was advantageous.

The link between socio-economic status and a poorer outcome from various cancers has been detected before, with both unhealthier lifestyles and a tendency to be diagnosed later blamed for the differences.

The Dundee research offers more clues as to how those lifestyles may interfere with the body's ability to protect itself from cancer.

Normally, the p53 gene is a "tumour suppressor", telling cells with cancerous or pre-cancerous changes to self-destruct before they can thrive.

However, when it mutates, that ability is reduced or removed, making the appearance of cancer far more likely.

The researchers looked at frozen tumour tissue samples from a total of 246 women who underwent cancer treatment between 1997 and 2001.

Tests were carried out to determine the level of mutation in the p53 gene, and these were cross-referenced against the postcode where the woman lived, offering a rough snapshot of her background.

Women from deprived postcodes were more likely to have a p53 mutation, and were less likely to have survived cancer-free.

Dr Lee Baker, who led the study, said: "This research makes a strong link between p53 and deprivation, and then between p53 mutation and recurrence and death.

"As a social issue, it shows that if we lift people up the deprivation scale they will be less likely to have problems with their p53 gene, and go on to develop breast cancer."

He said that the way women lived could have a direct bearing on their p53 gene.

"Deprivation alone doesn't cause breast cancer, but can affect prognosis when p53 is damaged as a result of lifestyle choices commonly associated with deprivation."

Dr Caitlin Palframan, from Breakthrough Breast Cancer, said: "We know there is a connection between deprivation and breast cancer survival but we don't yet know all the reasons for this.

"The researchers suggest a genetic link between deprivation and survival, but a range of lifestyle, environmental and genetic factors are all likely to play a part."

She added: "Early detection of breast cancer is vital to increase the chance of successful treatment. That is why we encourage all women to be breast aware and attend screening when invited."

http://news.bbc.co.uk/1/hi/health/8517027.stm
 
Why everything you've been told about evolution is wrong
What if Darwin's theory of natural selection is inaccurate? What if the way you live now affects the life expectancy of your descendants? Evolutionary thinking is having a revolution . . .

Oliver Burkeman The Guardian, Friday 19 March 2010

http://www.guardian.co.uk/science/2010/ ... enes-wrong

A very long article, based on recent books about evolution.
 
Stressed out? It could be in your genes
To their surprise, neuroscientists have discovered that stress can be passed down the generations – and even though it can be harmful, there is a logical biological reason.
By Laura Spinney
Thursday, 2 December 2010

Stress: there's not a system in your body it doesn't poison in the end. Over time, it raises your blood pressure, increases your chances of infertility and makes you age faster, and that's not all. Remove the source of the stress and all those horrors vanish, right?

Wrong. A growing body of scientific evidence suggests that not only can stress bring about permanent changes in your body, but you can even pass on some of those changes to your offspring. What's more, some researchers are now arguing that, far from being an exclusively human problem, psychological stress is rampant in nature. Its influence is so powerful, they claim, that like the conductor of an orchestra, it imposes a rhythm on whole ecosystems, determining which species are booming, and which are bust.

In fact, says Rachel Yehuda, a neuroscientist at the Mount Sinai School of Medicine in New York City, it's time to rewrite the textbooks about stress, doing away with the outdated idea that its effects are transient. "Some effects of the environment and of experience are long lasting," she says. "And for that we need a new biology." Yehuda had her first inkling of the indelible mark that stress can leave on families back in 1993, when she opened a clinic to treat the psychological problems of Holocaust survivors, and was deluged with calls from their adult children. Investigating further, she found that those children were particularly prone to post-traumatic stress disorder (PTSD). Both parents and children tended to have low levels of the hormone cortisol in their urine. Stranger still, the more severe the Holocaust survivor's PTSD symptoms, the less cortisol there was in their child's urine.

Cortisol plays an important role in the body's stress response. When a threat presents itself, the brain instructs the adrenal glands, just above the kidneys, to release hormones, including adrenaline, into the blood. The result is the racing heart, rapid breathing and so on that prepare us for fight or flight. When the threat has passed, the brain sends another signal to the adrenal glands to release cortisol. Cortisol shuts down the stress response by binding to receptors in certain regions of the brain, including the hippocampus.

At McGill University in Montreal, Canada, neuroscientist Michael Meaney has shown that stressful events in the early lives of rats, such as being reared by a negligent mother, can affect their response to stress as adults. The pups of negligent mothers grow up to be fearful and skittish, and they have fewer hippocampal receptors tocorticosterone (the rat equivalent of cortisol) than the pups of attentive mothers.

Last year, Meaney's group made headlines when it reported a similar finding in humans. Meaney's former student Patrick McGowan managed to get hold of tissue samples from the brains of 24 adults who had committed suicide, half of whom had been abused as children, and half of whom had not. The researchers found that the hippocampi of the abuse victims contained fewer cortisol receptors than those of the individuals who had not been abused.

In both rats and humans, therefore, stressful early life events leave an enduring trace in the brain, causing those brains to be less sensitive to the stress-dampening effects of cortisol. And in both species, that reduced sensitivity is associated with so-called epigenetic changes – chemical modifications to DNA that alter the activity of genes without altering the genes themselves. Genetic change, also known as evolution, takes millions of years, but epigenetic changes can be accumulated in a lifetime, allowing organisms to adapt more quickly than their genomes can. Or as biochemist Susan Gasser of the Friedrich Miescher Institute for Biomedical Research in Basel, Switzerland, puts it: "Epigenetics frees us from being a prisoner of our genes."

etc...

http://www.independent.co.uk/news/scien ... 48653.html
 
Genes can be lonely too

The inane nature-vs-nurture debate must be the hoariest old chestnut in the whole of science. ‘Of course it’s both, you idiot!’ I have always wanted to shout whenever someone makes a fool of themselves by claiming that it is purely one or the other. Just how genes and experience interact to create who we are is highlighted by the fascinating and increasingly important science of epigenetics.

Your genome is not fixed – something not always fully appreciated. It is altered throughout your life, from conception to death in all sorts of ways. That much has been knownfor a long time. Genes are turned on and off, mutate, are affected by the food you eat and the air you breathe and interact with each other. The DNA you are born with is not the DNA you die with. In a very real way, as you move through the world the world moves through you.

You’d expect something concrete like diet or disease to muck around with your genes, perhaps, but loneliness? Being in a nice family with a loving mother? It seems counterintuitive but there is now good evidence that your psychological environment in childhood can reprogramme your genome in quite profound ways.
Steven Cole, a geneticist at UCLA (pictured), outlined his research at the AAAS this week which shows a link between upbringing and changes in a person’s genome. Specifically, he took two groups of people – those who reported that their childhoods were lonely, and those who reported a gregarious, happy upbringing in a warm and stable family.

Looking at a string of genes in white blood cells (leucocytes) he found significant and consistent differences in gene expression between the two groups.
Specifically, people reporting a ‘lonely’ childhood expressed more genes linked to the inflammatory response, and fewer linked to the antiviral response. Put simply, people who had miserable childhoods seem to have subtly altered immune systems, making them a little worse at fighting off viral infections and a little better and dealing with bacteria.

Of course we must be careful about the arrow of causation; it could be that people born with these genes tend to make themselves miserable in childhood.
So a cross-check was done, this time looking at people whose childhoods had been in stable families and those who had been ‘reared’, if that is the word, largely by other youngsters. We are talking about the difference between kids who had happy family lives and those left to fend for themselves in gangs.

Again, we see the same pattern. As Prof Cole says, a toxic social environment has a toxic effect on your genes. The questions are, how and why does this occur?
It seems that your social life gets into your DNA via the conduit of your Central Nervous System. Psychological stress of any kind (even missing a night’s sleep is enough) can trigger a physical stress response, oxidative stress, which alters the way certain genes are expressed. That’s the how, but why?

Biology is conservative. Things like this don’t tend to happen for no reason. Prof Cole speculates that the genetic reprogramming is an adaptation to different kinds of environments. ‘Viruses are hallmark diseases of a good social life,’ he says. Children who live in close, stable families surrounded by kith and kin need good protection against the viral infections which are spread in such social situations.

Loners, on the other hand, are less vulnerable to viruses but more likely to succumb to generalised bacterial infections which are ubiquitous. If you are raised by a Los Angeles gang, your main threats will be violence, and stab wounds get infected by bacteria, not viruses. It’s only a hypothesis but it’s a compelling one.
This is science at its best, both profound and unsettling, teasing out a wholly unexpected mechanism that shows just how subtle the body-environment interface is.

This work raises philosophical questions. What is the nature of the self? After all, the average protein, the building blocks of the body, survives just 80 days. We are renewing ourselves in the most profound way all the time, and we are certainly not the same person as we were a year or even three months ago.
One thing we thought WAS a constant was our genome, the product of our parents’ DNA. But even this, it seems, is as fluid and ephemeral as a beach in a winter storm.

...

http://hanlonblog.dailymail.co.uk/
 
Gene switch 'key to heart health'

Scientists may be closer to understanding how genes can influence serious heart conditions, says a Nature Genetics report.
The failure to turn off a specific gene at the right time in an embryo's development could mean illness later in life.
Mice in which the gene was left active were born apparently healthy, but suffered heart muscle problems later.
A heart charity said it might one day be possible to fix the genetic switch.

The science of "epigenetics", which places importance not just on the genes you carry, but also how well they are working, is a relatively new area.
There is increasing evidence that suggests that while you carry the same set of genes for life, environmental factors, such as diet or even your mother's health while you are in the womb, could affect their activity, and your chances of certain illnesses later in life
.

The scientists from the Gladstone Institute in San Francisco focused on two genes, and their role in cardiomyopathy, an enlarging and weakening of the heart muscle which is a feature in life-threatening heart defects in children and adults.

One of the genes, called Six1, appears to play an important role in embryonic heart development, while the other, Ezh2, seems to have the job of switching off genes, including Six1, when they are no longer needed.
The researchers tested the precise relationship by stopping Ezh2 from working in the embryo and foetus at various points during pregnancy, thereby allowing Six1 to go on working for longer than usual.

They found that while the mice were born apparently normal and healthy, they then started to develop the signs of cardiomyopathy.
This suggested that although leaving Six1 switched on in humans might produce a seemingly healthy baby, it could be storing up heart problems for later in life.

Analysis of the results revealed that, in a healthy pregnancy, Six1 should only normally be switched on briefly during heart development.
Dr Paul Delgado-Olguin, one of the team, said: "When Six1 remains active for too long in Ezh2-deficient mice, it boosts the activity of other genes that shouldn't be activated in heart muscle cells - such as genes that make skeletal muscle.
"The enlargement and thickening of the mice's hearts over time eventually led to heart failure."

They are hopeful that further work will reveal more about the roots of congenital heart problems in early life.

Professor Peter Weissberg, from the British Heart Foundation, said the research was "important".
"What this shows is that a really crucial step in normal heart development is the switching off of genes.
"If this doesn't happen, and they continue to be expressed, this can cause trouble later in life."

He said that there was the possibility that faulty gene expression could be corrected, although it would be some years before such techniques could be used in humans.
The possible reasons for the faulty "switch" - whether dietary, medical or something else - could also be investigated, he added.

http://www.bbc.co.uk/news/health-16654187
 
I've never quite understood why the 'orthodox scientific community' is so violently opposed to the Lamarckian extension to Darwinism? Obviously his postulate lacked a mechanism at the time, but so did Darwinism?

If evidence is now coming to light that there _is_ a mechanism for post-natal influences to create genetic change which can in turn be passed on to the next generation, what's wrong with that?
 
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